Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Hmgb1P63158 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Hmgb1P63158 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Hmgb1P63158 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Hmgb1P63158 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb1P63158 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb1P63158 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb1P63158 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb1P63158 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb1P63158 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Hmgb1P63158 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Hmgb1P63158 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.57■□□□□ 0.88
Hmgb1P63158 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb1P63158 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.57■□□□□ 0.88
Hmgb1P63158 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Hmgb1P63158 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Hmgb1P63158 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hmgb1P63158 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Hmgb1P63158 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb1P63158 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Hmgb1P63158 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb1P63158 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.55■□□□□ 0.88
Hmgb1P63158 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Hmgb1P63158 Gm40848-201ENSMUST00000221998 324 ntBASIC20.55■□□□□ 0.88
Hmgb1P63158 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
Hmgb1P63158 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb1P63158 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb1P63158 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb1P63158 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hmgb1P63158 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Hmgb1P63158 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.54■□□□□ 0.88
Hmgb1P63158 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.54■□□□□ 0.88
Hmgb1P63158 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Hmgb1P63158 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hmgb1P63158 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.53■□□□□ 0.88
Hmgb1P63158 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.53■□□□□ 0.88
Hmgb1P63158 Gm43017-201ENSMUST00000198296 752 ntBASIC20.53■□□□□ 0.88
Hmgb1P63158 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.53■□□□□ 0.88
Hmgb1P63158 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Hmgb1P63158 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Hmgb1P63158 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Hmgb1P63158 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb1P63158 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb1P63158 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Hmgb1P63158 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb1P63158 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Hmgb1P63158 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
Hmgb1P63158 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.52■□□□□ 0.88
Hmgb1P63158 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.52■□□□□ 0.88
Hmgb1P63158 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb1P63158 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Hmgb1P63158 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb1P63158 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb1P63158 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Hmgb1P63158 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
Hmgb1P63158 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
Hmgb1P63158 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hmgb1P63158 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms