Protein–RNA interactions for Protein: P29533

Vcam1, Vascular cell adhesion protein 1, mousemouse

Predictions only

Length 739 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcam1P29533 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vcam1P29533 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC21.72■■□□□ 1.07
Vcam1P29533 Gm2399-201ENSMUST00000104944 225 ntBASIC21.72■■□□□ 1.07
Vcam1P29533 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Vcam1P29533 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Vcam1P29533 Gm21596-201ENSMUST00000178049 1316 ntBASIC21.72■■□□□ 1.07
Vcam1P29533 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
Vcam1P29533 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Vcam1P29533 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Vcam1P29533 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
Vcam1P29533 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vcam1P29533 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vcam1P29533 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vcam1P29533 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Vcam1P29533 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
Vcam1P29533 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Vcam1P29533 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
Vcam1P29533 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
Vcam1P29533 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Vcam1P29533 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
Vcam1P29533 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vcam1P29533 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vcam1P29533 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vcam1P29533 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vcam1P29533 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC21.68■■□□□ 1.06
Vcam1P29533 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Vcam1P29533 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Vcam1P29533 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Vcam1P29533 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vcam1P29533 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vcam1P29533 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC21.67■■□□□ 1.06
Vcam1P29533 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC21.67■■□□□ 1.06
Vcam1P29533 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC21.67■■□□□ 1.06
Vcam1P29533 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vcam1P29533 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Vcam1P29533 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vcam1P29533 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vcam1P29533 Gm8309-201ENSMUST00000206627 1448 ntBASIC21.66■■□□□ 1.06
Vcam1P29533 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Vcam1P29533 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC21.66■■□□□ 1.06
Vcam1P29533 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC21.66■■□□□ 1.06
Vcam1P29533 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Vcam1P29533 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vcam1P29533 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vcam1P29533 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vcam1P29533 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Vcam1P29533 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.66■■□□□ 1.06
Vcam1P29533 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 Gm10698-201ENSMUST00000182663 604 ntBASIC21.65■■□□□ 1.06
Vcam1P29533 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Vcam1P29533 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vcam1P29533 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Vcam1P29533 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vcam1P29533 Gm15847-201ENSMUST00000121417 1065 ntBASIC21.64■■□□□ 1.05
Vcam1P29533 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Vcam1P29533 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Vcam1P29533 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vcam1P29533 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Vcam1P29533 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vcam1P29533 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vcam1P29533 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vcam1P29533 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Vcam1P29533 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vcam1P29533 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC21.63■■□□□ 1.05
Vcam1P29533 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Vcam1P29533 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Vcam1P29533 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vcam1P29533 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Vcam1P29533 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vcam1P29533 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Vcam1P29533 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC21.62■■□□□ 1.05
Vcam1P29533 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Vcam1P29533 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC21.62■■□□□ 1.05
Vcam1P29533 Wnt10b-205ENSMUST00000226846 1204 ntBASIC21.62■■□□□ 1.05
Vcam1P29533 AC163280.1-201ENSMUST00000228194 1100 ntBASIC21.62■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms