Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Hmgb3O54879 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Hmgb3O54879 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Hmgb3O54879 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Hmgb3O54879 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.56■□□□□ 0.08
Hmgb3O54879 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
Hmgb3O54879 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC15.56■□□□□ 0.08
Hmgb3O54879 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC15.56■□□□□ 0.08
Hmgb3O54879 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Hmgb3O54879 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Hmgb3O54879 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Hmgb3O54879 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC15.55■□□□□ 0.08
Hmgb3O54879 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Hmgb3O54879 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC15.55■□□□□ 0.08
Hmgb3O54879 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Hmgb3O54879 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Hmgb3O54879 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Hmgb3O54879 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Hmgb3O54879 BC021767-201ENSMUST00000126387 1716 ntBASIC15.54■□□□□ 0.08
Hmgb3O54879 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Hmgb3O54879 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Hmgb3O54879 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Hmgb3O54879 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC15.54■□□□□ 0.08
Hmgb3O54879 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Hmgb3O54879 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Hmgb3O54879 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Hmgb3O54879 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Hmgb3O54879 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Hmgb3O54879 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
Hmgb3O54879 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Hmgb3O54879 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Hmgb3O54879 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC15.53■□□□□ 0.08
Hmgb3O54879 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Hmgb3O54879 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Hmgb3O54879 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC15.53■□□□□ 0.08
Hmgb3O54879 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC15.53■□□□□ 0.08
Hmgb3O54879 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Hmgb3O54879 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Hmgb3O54879 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
Hmgb3O54879 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
Hmgb3O54879 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC15.52■□□□□ 0.08
Hmgb3O54879 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Hmgb3O54879 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC15.52■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms