Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Mir5133-201ENSMUST00000174955 77 ntBASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn2aA0A0J9YTW6 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Scn2aA0A0J9YTW6 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Scn2aA0A0J9YTW6 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Scn2aA0A0J9YTW6 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Scn2aA0A0J9YTW6 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Scn2aA0A0J9YTW6 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms