Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm18688-201ENSMUST00000204695 1859 ntBASIC22.6■■□□□ 1.21
Scn11aQ9R053 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Scn11aQ9R053 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Scn11aQ9R053 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Scn11aQ9R053 AC124603.1-201ENSMUST00000223843 308 ntBASIC22.6■■□□□ 1.21
Scn11aQ9R053 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Scn11aQ9R053 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC22.6■■□□□ 1.21
Scn11aQ9R053 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Scn11aQ9R053 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC22.58■■□□□ 1.21
Scn11aQ9R053 Gm12896-201ENSMUST00000118430 226 ntBASIC22.58■■□□□ 1.21
Scn11aQ9R053 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Scn11aQ9R053 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC22.58■■□□□ 1.21
Scn11aQ9R053 AC126028.2-201ENSMUST00000228100 1833 ntBASIC22.58■■□□□ 1.21
Scn11aQ9R053 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Scn11aQ9R053 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Scn11aQ9R053 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
Scn11aQ9R053 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC22.58■■□□□ 1.21
Scn11aQ9R053 Golph3-202ENSMUST00000226517 2359 ntBASIC22.58■■□□□ 1.2
Scn11aQ9R053 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Scn11aQ9R053 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Scn11aQ9R053 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Scn11aQ9R053 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Scn11aQ9R053 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Scn11aQ9R053 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Scn11aQ9R053 Gm715-201ENSMUST00000117865 831 ntBASIC22.56■■□□□ 1.2
Scn11aQ9R053 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Scn11aQ9R053 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC22.56■■□□□ 1.2
Scn11aQ9R053 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
Scn11aQ9R053 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Scn11aQ9R053 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Scn11aQ9R053 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Gm2559-201ENSMUST00000201323 363 ntBASIC22.55■■□□□ 1.2
Scn11aQ9R053 Gm44549-201ENSMUST00000208351 577 ntBASIC22.55■■□□□ 1.2
Scn11aQ9R053 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Scn11aQ9R053 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Scn11aQ9R053 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Scn11aQ9R053 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Scn11aQ9R053 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Scn11aQ9R053 Gm2399-201ENSMUST00000104944 225 ntBASIC22.53■■□□□ 1.2
Scn11aQ9R053 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Scn11aQ9R053 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Scn11aQ9R053 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Scn11aQ9R053 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Scn11aQ9R053 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Scn11aQ9R053 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Scn11aQ9R053 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
Scn11aQ9R053 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Scn11aQ9R053 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Scn11aQ9R053 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC22.51■■□□□ 1.19
Scn11aQ9R053 Gm15565-201ENSMUST00000118890 427 ntBASIC22.51■■□□□ 1.19
Scn11aQ9R053 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Scn11aQ9R053 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Scn11aQ9R053 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Scn11aQ9R053 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Scn11aQ9R053 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Scn11aQ9R053 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms