Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Flg-201ENSMUST00000050758 1488 ntBASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Gm18032-201ENSMUST00000222541 538 ntBASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Odf3b-204ENSMUST00000227834 930 ntBASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col4a4Q9QZR9 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Gm10013-201ENSMUST00000106074 672 ntBASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.18■□□□□ 0.66
Col4a4Q9QZR9 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Gm43183-201ENSMUST00000200632 547 ntBASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col4a4Q9QZR9 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col4a4Q9QZR9 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a4Q9QZR9 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.15■□□□□ 0.66
Col4a4Q9QZR9 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a4Q9QZR9 Mtag2-201ENSMUST00000058665 714 ntBASIC19.15■□□□□ 0.66
Col4a4Q9QZR9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a4Q9QZR9 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col4a4Q9QZR9 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a4Q9QZR9 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a4Q9QZR9 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Col4a4Q9QZR9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Gm18959-201ENSMUST00000208954 655 ntBASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col4a4Q9QZR9 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Gm17971-201ENSMUST00000190239 806 ntBASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col4a4Q9QZR9 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 AA414768-201ENSMUST00000121924 1257 ntBASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col4a4Q9QZR9 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Gm15375-201ENSMUST00000119510 849 ntBASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col4a4Q9QZR9 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms