Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Gm10602-201ENSMUST00000098239 609 ntBASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Smc1aQ9CU62 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.91■□□□□ 0.94
Smc1aQ9CU62 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Smc1aQ9CU62 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Smc1aQ9CU62 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Smc1aQ9CU62 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Smc1aQ9CU62 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Smc1aQ9CU62 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Smc1aQ9CU62 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Smc1aQ9CU62 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Smc1aQ9CU62 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Smc1aQ9CU62 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Gm12933-201ENSMUST00000120203 872 ntBASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Smc1aQ9CU62 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.85■□□□□ 0.93
Smc1aQ9CU62 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Gm13234-201ENSMUST00000120010 747 ntBASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Smc1aQ9CU62 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms