Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc43Q9CR29 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc43Q9CR29 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ccdc43Q9CR29 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.87■□□□□ 0.93
Ccdc43Q9CR29 Golph3-205ENSMUST00000228671 2842 ntBASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Ccdc43Q9CR29 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ccdc43Q9CR29 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ccdc43Q9CR29 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ccdc43Q9CR29 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc43Q9CR29 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ccdc43Q9CR29 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.83■□□□□ 0.92
Ccdc43Q9CR29 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ccdc43Q9CR29 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Gm27801-201ENSMUST00000184174 223 ntBASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc43Q9CR29 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Ccdc43Q9CR29 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms