Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Use1Q9CQ56 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Use1Q9CQ56 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Use1Q9CQ56 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Use1Q9CQ56 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Use1Q9CQ56 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC17.75■□□□□ 0.43
Use1Q9CQ56 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Use1Q9CQ56 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Use1Q9CQ56 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Use1Q9CQ56 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC17.74■□□□□ 0.43
Use1Q9CQ56 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.74■□□□□ 0.43
Use1Q9CQ56 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Use1Q9CQ56 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 AC140930.3-201ENSMUST00000222935 274 ntBASIC17.73■□□□□ 0.43
Use1Q9CQ56 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Use1Q9CQ56 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Use1Q9CQ56 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Use1Q9CQ56 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Use1Q9CQ56 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Use1Q9CQ56 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Use1Q9CQ56 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC17.71■□□□□ 0.43
Use1Q9CQ56 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.71■□□□□ 0.43
Use1Q9CQ56 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Use1Q9CQ56 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
Use1Q9CQ56 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.42
Use1Q9CQ56 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Use1Q9CQ56 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Use1Q9CQ56 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.7■□□□□ 0.42
Use1Q9CQ56 Gm13241-201ENSMUST00000094493 780 ntBASIC17.7■□□□□ 0.42
Use1Q9CQ56 AC165080.2-201ENSMUST00000217491 1530 ntBASIC17.7■□□□□ 0.42
Use1Q9CQ56 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Use1Q9CQ56 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms