Protein–RNA interactions for Protein: Q99PF4

Cdh23, Cadherin-23, mousemouse

Predictions only

Length 3,354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh23Q99PF4 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdh23Q99PF4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Cdh23Q99PF4 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cdh23Q99PF4 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.45■□□□□ 0.7
Cdh23Q99PF4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdh23Q99PF4 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdh23Q99PF4 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cdh23Q99PF4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
Cdh23Q99PF4 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdh23Q99PF4 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Gm23634-201ENSMUST00000175071 91 ntBASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdh23Q99PF4 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.43■□□□□ 0.7
Cdh23Q99PF4 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdh23Q99PF4 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Gm25925-201ENSMUST00000158314 306 ntBASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Gm33142-201ENSMUST00000193913 867 ntBASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdh23Q99PF4 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdh23Q99PF4 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdh23Q99PF4 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdh23Q99PF4 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdh23Q99PF4 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdh23Q99PF4 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdh23Q99PF4 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.39■□□□□ 0.69
Cdh23Q99PF4 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cdh23Q99PF4 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms