Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Ushbp1Q8R370 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Ushbp1Q8R370 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.08■□□□□ 0.97
Ushbp1Q8R370 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ushbp1Q8R370 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Ushbp1Q8R370 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ushbp1Q8R370 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Ushbp1Q8R370 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ushbp1Q8R370 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ushbp1Q8R370 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ushbp1Q8R370 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Reep4-203ENSMUST00000226563 1444 ntBASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Gm13234-201ENSMUST00000120010 747 ntBASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ushbp1Q8R370 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ushbp1Q8R370 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ushbp1Q8R370 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Gm7860-201ENSMUST00000121190 879 ntBASIC21.04■□□□□ 0.96
Ushbp1Q8R370 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Ushbp1Q8R370 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ushbp1Q8R370 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ushbp1Q8R370 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ushbp1Q8R370 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ushbp1Q8R370 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ushbp1Q8R370 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ushbp1Q8R370 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Ushbp1Q8R370 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ushbp1Q8R370 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
Ushbp1Q8R370 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ushbp1Q8R370 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms