Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trub1Q8C0D0 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trub1Q8C0D0 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trub1Q8C0D0 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.47■□□□□ 0.71
Trub1Q8C0D0 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Reep4-203ENSMUST00000226563 1444 ntBASIC19.46■□□□□ 0.71
Trub1Q8C0D0 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.46■□□□□ 0.71
Trub1Q8C0D0 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trub1Q8C0D0 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.45■□□□□ 0.7
Trub1Q8C0D0 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trub1Q8C0D0 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Trub1Q8C0D0 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trub1Q8C0D0 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trub1Q8C0D0 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Trub1Q8C0D0 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trub1Q8C0D0 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trub1Q8C0D0 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
Trub1Q8C0D0 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Gm13146-201ENSMUST00000118508 780 ntBASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.41■□□□□ 0.7
Trub1Q8C0D0 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trub1Q8C0D0 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms