Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ddx55Q6ZPL9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ddx55Q6ZPL9 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 AC160393.1-201ENSMUST00000218378 1279 ntBASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ddx55Q6ZPL9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.04
Ddx55Q6ZPL9 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddx55Q6ZPL9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ddx55Q6ZPL9 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx55Q6ZPL9 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC21.57■■□□□ 1.04
Ddx55Q6ZPL9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx55Q6ZPL9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx55Q6ZPL9 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ddx55Q6ZPL9 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Mir5122-201ENSMUST00000175004 89 ntBASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Wnt10b-205ENSMUST00000226846 1204 ntBASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ddx55Q6ZPL9 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Gm9987-201ENSMUST00000069768 567 ntBASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC21.55■■□□□ 1.04
Ddx55Q6ZPL9 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Gm20472-201ENSMUST00000174403 1240 ntBASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ddx55Q6ZPL9 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Alkbh1-212ENSMUST00000185301 408 ntBASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ddx55Q6ZPL9 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Gm11927-201ENSMUST00000118472 759 ntBASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 AC153881.2-201ENSMUST00000214877 204 ntBASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 AC121577.1-201ENSMUST00000227302 707 ntBASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.52■■□□□ 1.04
Ddx55Q6ZPL9 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Ddx55Q6ZPL9 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx55Q6ZPL9 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx55Q6ZPL9 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx55Q6ZPL9 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx55Q6ZPL9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx55Q6ZPL9 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ddx55Q6ZPL9 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms