Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.49■□□□□ 0.39
ShhQ62226 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
ShhQ62226 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.48■□□□□ 0.39
ShhQ62226 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
ShhQ62226 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
ShhQ62226 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.48■□□□□ 0.39
ShhQ62226 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ShhQ62226 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ShhQ62226 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
ShhQ62226 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.47■□□□□ 0.39
ShhQ62226 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ShhQ62226 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC17.47■□□□□ 0.39
ShhQ62226 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ShhQ62226 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
ShhQ62226 Mir6982-201ENSMUST00000184354 68 ntBASIC17.47■□□□□ 0.39
ShhQ62226 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.47■□□□□ 0.39
ShhQ62226 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
ShhQ62226 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ShhQ62226 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ShhQ62226 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
ShhQ62226 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ShhQ62226 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ShhQ62226 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ShhQ62226 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.46■□□□□ 0.39
ShhQ62226 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ShhQ62226 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
ShhQ62226 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
ShhQ62226 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 Gm5408-201ENSMUST00000197998 747 ntBASIC17.45■□□□□ 0.38
ShhQ62226 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.45■□□□□ 0.38
ShhQ62226 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ShhQ62226 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ShhQ62226 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ShhQ62226 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
ShhQ62226 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
ShhQ62226 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.44■□□□□ 0.38
ShhQ62226 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ShhQ62226 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ShhQ62226 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
ShhQ62226 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
ShhQ62226 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
ShhQ62226 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.43■□□□□ 0.38
ShhQ62226 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ShhQ62226 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.42■□□□□ 0.38
ShhQ62226 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
ShhQ62226 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.42■□□□□ 0.38
ShhQ62226 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
ShhQ62226 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.42■□□□□ 0.38
ShhQ62226 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.42■□□□□ 0.38
ShhQ62226 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
ShhQ62226 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
ShhQ62226 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
ShhQ62226 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
ShhQ62226 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
ShhQ62226 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.41■□□□□ 0.38
ShhQ62226 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ShhQ62226 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.41■□□□□ 0.38
ShhQ62226 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms