Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm10013-201ENSMUST00000106074 672 ntBASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Gm43183-201ENSMUST00000200632 547 ntBASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Gm12382-201ENSMUST00000122005 922 ntBASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Col27a1Q5QNQ9 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Mtag2-201ENSMUST00000058665 714 ntBASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col27a1Q5QNQ9 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Zfp783-201ENSMUST00000095946 670 ntBASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Gm18959-201ENSMUST00000208954 655 ntBASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col27a1Q5QNQ9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col27a1Q5QNQ9 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Gm17971-201ENSMUST00000190239 806 ntBASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Gm9103-201ENSMUST00000119371 405 ntBASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 AA414768-201ENSMUST00000121924 1257 ntBASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col27a1Q5QNQ9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col27a1Q5QNQ9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Gm37292-201ENSMUST00000192062 758 ntBASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col27a1Q5QNQ9 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Ank2-226ENSMUST00000189368 339 ntBASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col27a1Q5QNQ9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col27a1Q5QNQ9 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms