Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Ccdc88bQ4QRL3 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Ccdc88bQ4QRL3 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Ccdc88bQ4QRL3 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC30.98■■■□□ 2.55
Ccdc88bQ4QRL3 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Gm20634-201ENSMUST00000090779 2956 ntBASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc88bQ4QRL3 Gm2399-201ENSMUST00000104944 225 ntBASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc88bQ4QRL3 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC30.95■■■□□ 2.55
Ccdc88bQ4QRL3 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC30.95■■■□□ 2.55
Ccdc88bQ4QRL3 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC30.95■■■□□ 2.55
Ccdc88bQ4QRL3 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc88bQ4QRL3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc88bQ4QRL3 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc88bQ4QRL3 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Gm10698-201ENSMUST00000182663 604 ntBASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC30.95■■■□□ 2.54
Ccdc88bQ4QRL3 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Ccdc88bQ4QRL3 Gm21596-201ENSMUST00000178049 1316 ntBASIC30.94■■■□□ 2.54
Ccdc88bQ4QRL3 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Ccdc88bQ4QRL3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Ccdc88bQ4QRL3 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Ccdc88bQ4QRL3 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC30.94■■■□□ 2.54
Ccdc88bQ4QRL3 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Gm13836-201ENSMUST00000121159 501 ntBASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc88bQ4QRL3 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ccdc88bQ4QRL3 AC124603.1-201ENSMUST00000223843 308 ntBASIC30.92■■■□□ 2.54
Ccdc88bQ4QRL3 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ccdc88bQ4QRL3 Golph3-202ENSMUST00000226517 2359 ntBASIC30.92■■■□□ 2.54
Ccdc88bQ4QRL3 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC30.91■■■□□ 2.54
Ccdc88bQ4QRL3 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
Ccdc88bQ4QRL3 Mir6982-201ENSMUST00000184354 68 ntBASIC30.91■■■□□ 2.54
Ccdc88bQ4QRL3 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Ccdc88bQ4QRL3 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ccdc88bQ4QRL3 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ccdc88bQ4QRL3 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ccdc88bQ4QRL3 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Ccdc88bQ4QRL3 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ccdc88bQ4QRL3 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC30.88■■■□□ 2.53
Ccdc88bQ4QRL3 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC30.88■■■□□ 2.53
Ccdc88bQ4QRL3 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Ccdc88bQ4QRL3 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
Ccdc88bQ4QRL3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Ccdc88bQ4QRL3 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Ccdc88bQ4QRL3 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Ccdc88bQ4QRL3 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC30.86■■■□□ 2.53
Ccdc88bQ4QRL3 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
Ccdc88bQ4QRL3 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Ccdc88bQ4QRL3 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Ccdc88bQ4QRL3 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Ccdc88bQ4QRL3 Gm18688-201ENSMUST00000204695 1859 ntBASIC30.85■■■□□ 2.53
Ccdc88bQ4QRL3 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC30.85■■■□□ 2.53
Ccdc88bQ4QRL3 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC30.85■■■□□ 2.53
Ccdc88bQ4QRL3 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC30.85■■■□□ 2.53
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms