Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.66■□□□□ 0.9
Hmgb1P63158 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb1P63158 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb1P63158 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Hmgb1P63158 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.66■□□□□ 0.9
Hmgb1P63158 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.66■□□□□ 0.9
Hmgb1P63158 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.66■□□□□ 0.9
Hmgb1P63158 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb1P63158 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb1P63158 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb1P63158 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb1P63158 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb1P63158 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Hmgb1P63158 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.65■□□□□ 0.9
Hmgb1P63158 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb1P63158 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Hmgb1P63158 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb1P63158 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.64■□□□□ 0.89
Hmgb1P63158 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb1P63158 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb1P63158 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Hmgb1P63158 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb1P63158 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb1P63158 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb1P63158 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb1P63158 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Hmgb1P63158 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
Hmgb1P63158 Gm26833-201ENSMUST00000180899 440 ntBASIC20.63■□□□□ 0.89
Hmgb1P63158 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb1P63158 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb1P63158 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb1P63158 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Hmgb1P63158 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.62■□□□□ 0.89
Hmgb1P63158 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.62■□□□□ 0.89
Hmgb1P63158 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
Hmgb1P63158 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20.62■□□□□ 0.89
Hmgb1P63158 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC20.62■□□□□ 0.89
Hmgb1P63158 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb1P63158 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Hmgb1P63158 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.61■□□□□ 0.89
Hmgb1P63158 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb1P63158 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.6■□□□□ 0.89
Hmgb1P63158 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Gm45417-201ENSMUST00000209533 758 ntBASIC20.6■□□□□ 0.89
Hmgb1P63158 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.6■□□□□ 0.89
Hmgb1P63158 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Hmgb1P63158 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.6■□□□□ 0.89
Hmgb1P63158 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Hmgb1P63158 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.59■□□□□ 0.89
Hmgb1P63158 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
Hmgb1P63158 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hmgb1P63158 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb1P63158 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hmgb1P63158 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms