Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm37856-201ENSMUST00000191634 999 ntBASIC17.95■□□□□ 0.46
Sox3P53784 Gm5075-201ENSMUST00000196916 622 ntBASIC17.95■□□□□ 0.46
Sox3P53784 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox3P53784 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.95■□□□□ 0.46
Sox3P53784 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.95■□□□□ 0.46
Sox3P53784 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Sox3P53784 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sox3P53784 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Sox3P53784 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox3P53784 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Sox3P53784 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.94■□□□□ 0.46
Sox3P53784 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox3P53784 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
Sox3P53784 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox3P53784 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sox3P53784 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.94■□□□□ 0.46
Sox3P53784 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox3P53784 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.94■□□□□ 0.46
Sox3P53784 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox3P53784 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sox3P53784 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Sox3P53784 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.93■□□□□ 0.46
Sox3P53784 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
Sox3P53784 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sox3P53784 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Sox3P53784 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox3P53784 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Sox3P53784 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.92■□□□□ 0.46
Sox3P53784 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.92■□□□□ 0.46
Sox3P53784 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox3P53784 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox3P53784 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Sox3P53784 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Sox3P53784 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.91■□□□□ 0.46
Sox3P53784 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.91■□□□□ 0.46
Sox3P53784 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Sox3P53784 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.9■□□□□ 0.46
Sox3P53784 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Sox3P53784 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Sox3P53784 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.89■□□□□ 0.45
Sox3P53784 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.89■□□□□ 0.45
Sox3P53784 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.89■□□□□ 0.45
Sox3P53784 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Sox3P53784 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Sox3P53784 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Sox3P53784 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sox3P53784 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Sox3P53784 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Sox3P53784 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sox3P53784 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Sox3P53784 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Sox3P53784 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Sox3P53784 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Sox3P53784 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sox3P53784 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Sox3P53784 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sox3P53784 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
Sox3P53784 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.87■□□□□ 0.45
Sox3P53784 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.87■□□□□ 0.45
Sox3P53784 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.87■□□□□ 0.45
Sox3P53784 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sox3P53784 Gm6365-201ENSMUST00000054711 744 ntBASIC17.87■□□□□ 0.45
Sox3P53784 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.87■□□□□ 0.45
Sox3P53784 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sox3P53784 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sox3P53784 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms