Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Usp4P35123 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp4P35123 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Usp4P35123 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp4P35123 Gm8493-201ENSMUST00000196881 489 ntBASIC19.68■□□□□ 0.74
Usp4P35123 Gm43017-201ENSMUST00000198296 752 ntBASIC19.68■□□□□ 0.74
Usp4P35123 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp4P35123 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp4P35123 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp4P35123 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp4P35123 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Usp4P35123 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp4P35123 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp4P35123 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp4P35123 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Usp4P35123 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.67■□□□□ 0.74
Usp4P35123 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.67■□□□□ 0.74
Usp4P35123 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
Usp4P35123 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp4P35123 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp4P35123 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp4P35123 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp4P35123 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp4P35123 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp4P35123 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Usp4P35123 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.66■□□□□ 0.74
Usp4P35123 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Usp4P35123 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp4P35123 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Usp4P35123 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Usp4P35123 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.65■□□□□ 0.74
Usp4P35123 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.65■□□□□ 0.74
Usp4P35123 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Usp4P35123 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp4P35123 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp4P35123 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp4P35123 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp4P35123 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Usp4P35123 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
Usp4P35123 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Usp4P35123 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Usp4P35123 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp4P35123 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.63■□□□□ 0.73
Usp4P35123 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.63■□□□□ 0.73
Usp4P35123 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp4P35123 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Usp4P35123 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Usp4P35123 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Usp4P35123 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp4P35123 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp4P35123 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp4P35123 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Usp4P35123 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.62■□□□□ 0.73
Usp4P35123 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.62■□□□□ 0.73
Usp4P35123 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
Usp4P35123 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp4P35123 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.62■□□□□ 0.73
Usp4P35123 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Usp4P35123 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp4P35123 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Usp4P35123 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
Usp4P35123 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.61■□□□□ 0.73
Usp4P35123 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.61■□□□□ 0.73
Usp4P35123 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.61■□□□□ 0.73
Usp4P35123 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Usp4P35123 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp4P35123 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms