Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Msx1P13297 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msx1P13297 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Msx1P13297 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Msx1P13297 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.78■□□□□ 0.44
Msx1P13297 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Gm13168-201ENSMUST00000121771 632 ntBASIC17.78■□□□□ 0.44
Msx1P13297 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.78■□□□□ 0.44
Msx1P13297 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.78■□□□□ 0.44
Msx1P13297 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msx1P13297 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msx1P13297 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msx1P13297 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msx1P13297 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Msx1P13297 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msx1P13297 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msx1P13297 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msx1P13297 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.77■□□□□ 0.44
Msx1P13297 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msx1P13297 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Msx1P13297 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Msx1P13297 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Msx1P13297 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msx1P13297 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msx1P13297 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.76■□□□□ 0.43
Msx1P13297 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.76■□□□□ 0.43
Msx1P13297 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msx1P13297 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.76■□□□□ 0.43
Msx1P13297 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Msx1P13297 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Msx1P13297 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Msx1P13297 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msx1P13297 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msx1P13297 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Msx1P13297 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Msx1P13297 Gm13146-201ENSMUST00000118508 780 ntBASIC17.74■□□□□ 0.43
Msx1P13297 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.74■□□□□ 0.43
Msx1P13297 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Msx1P13297 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msx1P13297 Gm6365-201ENSMUST00000054711 744 ntBASIC17.74■□□□□ 0.43
Msx1P13297 Gm10812-201ENSMUST00000099864 546 ntBASIC17.74■□□□□ 0.43
Msx1P13297 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.74■□□□□ 0.43
Msx1P13297 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msx1P13297 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Msx1P13297 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msx1P13297 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Msx1P13297 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msx1P13297 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Msx1P13297 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.73■□□□□ 0.43
Msx1P13297 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msx1P13297 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.73■□□□□ 0.43
Msx1P13297 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.73■□□□□ 0.43
Msx1P13297 Gm20049-201ENSMUST00000219950 730 ntBASIC17.73■□□□□ 0.43
Msx1P13297 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.73■□□□□ 0.43
Msx1P13297 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Msx1P13297 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msx1P13297 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msx1P13297 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Msx1P13297 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms