Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Hoxd3P09027 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Hoxd3P09027 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Hoxd3P09027 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Hoxd3P09027 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Hoxd3P09027 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hoxd3P09027 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Hoxd3P09027 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Hoxd3P09027 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC14.58□□□□□ -0.08
Hoxd3P09027 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Hoxd3P09027 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Hoxd3P09027 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC14.58□□□□□ -0.08
Hoxd3P09027 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC14.58□□□□□ -0.08
Hoxd3P09027 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC14.58□□□□□ -0.08
Hoxd3P09027 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hoxd3P09027 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Hoxd3P09027 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC14.58□□□□□ -0.08
Hoxd3P09027 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Hoxd3P09027 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC14.57□□□□□ -0.08
Hoxd3P09027 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Hoxd3P09027 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Hoxd3P09027 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Hoxd3P09027 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
Hoxd3P09027 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
Hoxd3P09027 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Hoxd3P09027 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Hoxd3P09027 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Hoxd3P09027 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC14.55□□□□□ -0.08
Hoxd3P09027 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC14.55□□□□□ -0.08
Hoxd3P09027 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Hoxd3P09027 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Hoxd3P09027 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Hoxd3P09027 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Hoxd3P09027 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Gm3807-201ENSMUST00000193520 1168 ntBASIC14.54□□□□□ -0.08
Hoxd3P09027 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Hoxd3P09027 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Hoxd3P09027 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Hoxd3P09027 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Hoxd3P09027 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC14.54□□□□□ -0.08
Hoxd3P09027 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hoxd3P09027 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC14.53□□□□□ -0.08
Hoxd3P09027 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hoxd3P09027 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Hoxd3P09027 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Hoxd3P09027 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Hoxd3P09027 Gm45640-201ENSMUST00000210665 1896 ntBASIC14.53□□□□□ -0.08
Hoxd3P09027 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms