Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.17■□□□□ 0.34
Col5a1O88207 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.17■□□□□ 0.34
Col5a1O88207 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Dio3-201ENSMUST00000097228 1449 ntBASIC17.17■□□□□ 0.34
Col5a1O88207 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Mir1199-201ENSMUST00000117015 119 ntBASIC17.17■□□□□ 0.34
Col5a1O88207 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col5a1O88207 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Col5a1O88207 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Col5a1O88207 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col5a1O88207 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.16■□□□□ 0.34
Col5a1O88207 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col5a1O88207 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col5a1O88207 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col5a1O88207 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col5a1O88207 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col5a1O88207 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col5a1O88207 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col5a1O88207 Gm43799-201ENSMUST00000201845 579 ntBASIC17.15■□□□□ 0.34
Col5a1O88207 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC17.15■□□□□ 0.34
Col5a1O88207 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col5a1O88207 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col5a1O88207 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col5a1O88207 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col5a1O88207 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col5a1O88207 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Col5a1O88207 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.14■□□□□ 0.34
Col5a1O88207 Gm21362-201ENSMUST00000194272 928 ntBASIC17.14■□□□□ 0.34
Col5a1O88207 Gm2559-201ENSMUST00000201323 363 ntBASIC17.14■□□□□ 0.34
Col5a1O88207 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col5a1O88207 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col5a1O88207 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.14■□□□□ 0.33
Col5a1O88207 Mir5122-201ENSMUST00000175004 89 ntBASIC17.14■□□□□ 0.33
Col5a1O88207 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.14■□□□□ 0.33
Col5a1O88207 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.14■□□□□ 0.33
Col5a1O88207 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col5a1O88207 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col5a1O88207 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col5a1O88207 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col5a1O88207 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col5a1O88207 Gm7367-201ENSMUST00000057611 492 ntBASIC17.13■□□□□ 0.33
Col5a1O88207 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col5a1O88207 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col5a1O88207 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col5a1O88207 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Col5a1O88207 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col5a1O88207 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col5a1O88207 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col5a1O88207 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Col5a1O88207 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.12■□□□□ 0.33
Col5a1O88207 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col5a1O88207 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.12■□□□□ 0.33
Col5a1O88207 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col5a1O88207 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col5a1O88207 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Col5a1O88207 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.11■□□□□ 0.33
Col5a1O88207 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.11■□□□□ 0.33
Col5a1O88207 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.11■□□□□ 0.33
Col5a1O88207 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.11■□□□□ 0.33
Col5a1O88207 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.11■□□□□ 0.33
Col5a1O88207 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Col5a1O88207 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col5a1O88207 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col5a1O88207 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col5a1O88207 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col5a1O88207 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col5a1O88207 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col5a1O88207 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col5a1O88207 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.1■□□□□ 0.33
Col5a1O88207 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col5a1O88207 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
Col5a1O88207 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col5a1O88207 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col5a1O88207 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.1■□□□□ 0.33
Col5a1O88207 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms