Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sdc4O35988 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.4■□□□□ 0.7
Sdc4O35988 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sdc4O35988 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
Sdc4O35988 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Sdc4O35988 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sdc4O35988 Golph3-202ENSMUST00000226517 2359 ntBASIC19.4■□□□□ 0.7
Sdc4O35988 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sdc4O35988 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Sdc4O35988 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sdc4O35988 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sdc4O35988 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.39■□□□□ 0.69
Sdc4O35988 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sdc4O35988 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sdc4O35988 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sdc4O35988 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Sdc4O35988 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sdc4O35988 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
Sdc4O35988 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.38■□□□□ 0.69
Sdc4O35988 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.38■□□□□ 0.69
Sdc4O35988 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sdc4O35988 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Sdc4O35988 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.37■□□□□ 0.69
Sdc4O35988 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.37■□□□□ 0.69
Sdc4O35988 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Sdc4O35988 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sdc4O35988 Gm43859-201ENSMUST00000200075 1412 ntBASIC19.36■□□□□ 0.69
Sdc4O35988 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sdc4O35988 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.36■□□□□ 0.69
Sdc4O35988 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sdc4O35988 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.36■□□□□ 0.69
Sdc4O35988 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sdc4O35988 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Sdc4O35988 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC19.36■□□□□ 0.69
Sdc4O35988 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Sdc4O35988 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Sdc4O35988 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Sdc4O35988 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.35■□□□□ 0.69
Sdc4O35988 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.35■□□□□ 0.69
Sdc4O35988 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Sdc4O35988 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sdc4O35988 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC19.34■□□□□ 0.69
Sdc4O35988 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.34■□□□□ 0.69
Sdc4O35988 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Sdc4O35988 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.34■□□□□ 0.69
Sdc4O35988 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.34■□□□□ 0.69
Sdc4O35988 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.34■□□□□ 0.69
Sdc4O35988 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.34■□□□□ 0.69
Sdc4O35988 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Sdc4O35988 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sdc4O35988 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Sdc4O35988 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Sdc4O35988 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Sdc4O35988 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Sdc4O35988 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.33■□□□□ 0.68
Sdc4O35988 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.33■□□□□ 0.68
Sdc4O35988 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.33■□□□□ 0.68
Sdc4O35988 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Sdc4O35988 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sdc4O35988 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms