Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1i3O35627 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1i3O35627 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1i3O35627 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1i3O35627 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1i3O35627 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1i3O35627 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Nr1i3O35627 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Nr1i3O35627 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Nr1i3O35627 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.23■□□□□ 0.83
Nr1i3O35627 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1i3O35627 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.23■□□□□ 0.83
Nr1i3O35627 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.22■□□□□ 0.83
Nr1i3O35627 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Nr1i3O35627 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Nr1i3O35627 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.22■□□□□ 0.83
Nr1i3O35627 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.22■□□□□ 0.83
Nr1i3O35627 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.22■□□□□ 0.83
Nr1i3O35627 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1i3O35627 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.21■□□□□ 0.83
Nr1i3O35627 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1i3O35627 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1i3O35627 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1i3O35627 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1i3O35627 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1i3O35627 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.21■□□□□ 0.83
Nr1i3O35627 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1i3O35627 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.2■□□□□ 0.82
Nr1i3O35627 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Nr1i3O35627 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1i3O35627 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.2■□□□□ 0.82
Nr1i3O35627 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1i3O35627 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1i3O35627 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1i3O35627 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1i3O35627 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1i3O35627 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1i3O35627 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.19■□□□□ 0.82
Nr1i3O35627 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.19■□□□□ 0.82
Nr1i3O35627 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.19■□□□□ 0.82
Nr1i3O35627 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.19■□□□□ 0.82
Nr1i3O35627 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.19■□□□□ 0.82
Nr1i3O35627 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.19■□□□□ 0.82
Nr1i3O35627 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1i3O35627 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.19■□□□□ 0.82
Nr1i3O35627 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Nr1i3O35627 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Nr1i3O35627 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Nr1i3O35627 Gm40848-201ENSMUST00000221998 324 ntBASIC20.18■□□□□ 0.82
Nr1i3O35627 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1i3O35627 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Nr1i3O35627 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.17■□□□□ 0.82
Nr1i3O35627 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Nr1i3O35627 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Nr1i3O35627 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Gm45417-201ENSMUST00000209533 758 ntBASIC20.17■□□□□ 0.82
Nr1i3O35627 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1i3O35627 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms