Protein–RNA interactions for Protein: M0QWN7

Usp35, Ubiquitin-specific peptidase 35, mousemouse

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp35M0QWN7 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp35M0QWN7 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.09■□□□□ 0.81
Usp35M0QWN7 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp35M0QWN7 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp35M0QWN7 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp35M0QWN7 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp35M0QWN7 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp35M0QWN7 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Usp35M0QWN7 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Usp35M0QWN7 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp35M0QWN7 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp35M0QWN7 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp35M0QWN7 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Usp35M0QWN7 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp35M0QWN7 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp35M0QWN7 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Gm38205-201ENSMUST00000192243 258 ntBASIC20.07■□□□□ 0.8
Usp35M0QWN7 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.07■□□□□ 0.8
Usp35M0QWN7 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp35M0QWN7 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.06■□□□□ 0.8
Usp35M0QWN7 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp35M0QWN7 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.05■□□□□ 0.8
Usp35M0QWN7 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Golph3-205ENSMUST00000228671 2842 ntBASIC20.05■□□□□ 0.8
Usp35M0QWN7 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp35M0QWN7 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp35M0QWN7 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Usp35M0QWN7 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp35M0QWN7 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp35M0QWN7 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp35M0QWN7 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms