Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Col4a4Q9QZR9 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a4Q9QZR9 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a4Q9QZR9 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
Col4a4Q9QZR9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a4Q9QZR9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.27■□□□□ 0.68
Col4a4Q9QZR9 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.67
Col4a4Q9QZR9 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.27■□□□□ 0.67
Col4a4Q9QZR9 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col4a4Q9QZR9 Gm33142-201ENSMUST00000193913 867 ntBASIC19.27■□□□□ 0.67
Col4a4Q9QZR9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.27■□□□□ 0.67
Col4a4Q9QZR9 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a4Q9QZR9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.25■□□□□ 0.67
Col4a4Q9QZR9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a4Q9QZR9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a4Q9QZR9 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Gm23634-201ENSMUST00000175071 91 ntBASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Gm6345-202ENSMUST00000180900 204 ntBASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Gm18025-201ENSMUST00000221733 862 ntBASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Timm23-208ENSMUST00000226683 750 ntBASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a4Q9QZR9 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Gm12382-201ENSMUST00000122005 922 ntBASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a4Q9QZR9 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.66
Col4a4Q9QZR9 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a4Q9QZR9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms