Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Gm12251-201ENSMUST00000117893 792 ntBASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim39Q9ESN2 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Trim39Q9ESN2 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Mir7075-201ENSMUST00000184187 82 ntBASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim39Q9ESN2 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 AA386476-201ENSMUST00000098781 1665 ntBASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim39Q9ESN2 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim39Q9ESN2 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Trim39Q9ESN2 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim39Q9ESN2 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim39Q9ESN2 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Trim39Q9ESN2 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim39Q9ESN2 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Gm45417-201ENSMUST00000209533 758 ntBASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim39Q9ESN2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim39Q9ESN2 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms