Protein–RNA interactions for Protein: Q9CWY9

Rpain, RPA-interacting protein, mousemouse

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RpainQ9CWY9 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RpainQ9CWY9 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
RpainQ9CWY9 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RpainQ9CWY9 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RpainQ9CWY9 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RpainQ9CWY9 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.65■□□□□ 0.74
RpainQ9CWY9 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Gm7160-202ENSMUST00000188519 1027 ntBASIC19.65■□□□□ 0.74
RpainQ9CWY9 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RpainQ9CWY9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
RpainQ9CWY9 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
RpainQ9CWY9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Gm18284-201ENSMUST00000172604 624 ntBASIC19.64■□□□□ 0.73
RpainQ9CWY9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
RpainQ9CWY9 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
RpainQ9CWY9 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.63■□□□□ 0.73
RpainQ9CWY9 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.63■□□□□ 0.73
RpainQ9CWY9 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.63■□□□□ 0.73
RpainQ9CWY9 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
RpainQ9CWY9 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Gm8495-201ENSMUST00000188740 694 ntBASIC19.62■□□□□ 0.73
RpainQ9CWY9 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
RpainQ9CWY9 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
RpainQ9CWY9 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.6■□□□□ 0.73
RpainQ9CWY9 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.6■□□□□ 0.73
RpainQ9CWY9 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RpainQ9CWY9 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RpainQ9CWY9 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RpainQ9CWY9 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RpainQ9CWY9 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
RpainQ9CWY9 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
RpainQ9CWY9 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms