Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lsm1Q8VC85 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lsm1Q8VC85 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lsm1Q8VC85 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lsm1Q8VC85 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Lsm1Q8VC85 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Gm7860-201ENSMUST00000121190 879 ntBASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 CT030146.1-201ENSMUST00000220919 217 ntBASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Lsm1Q8VC85 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Lsm1Q8VC85 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Lsm1Q8VC85 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Lsm1Q8VC85 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Lsm1Q8VC85 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Gm27801-201ENSMUST00000184174 223 ntBASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Gm8493-201ENSMUST00000196881 489 ntBASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Lsm1Q8VC85 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Lsm1Q8VC85 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Lsm1Q8VC85 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Lsm1Q8VC85 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.04■□□□□ 0.48
Lsm1Q8VC85 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Lsm1Q8VC85 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Lsm1Q8VC85 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Lsm1Q8VC85 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms