Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc28aQ8CEI3 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
Ccdc28aQ8CEI3 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc28aQ8CEI3 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Gm14117-201ENSMUST00000122417 843 ntBASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Ccdc28aQ8CEI3 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Gm12922-201ENSMUST00000120626 809 ntBASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Rps24-207ENSMUST00000224568 714 ntBASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Ccdc28aQ8CEI3 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Ccdc28aQ8CEI3 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc28aQ8CEI3 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.84■□□□□ 0.77
Ccdc28aQ8CEI3 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
Ccdc28aQ8CEI3 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc28aQ8CEI3 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.83■□□□□ 0.77
Ccdc28aQ8CEI3 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc28aQ8CEI3 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc28aQ8CEI3 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Ccdc28aQ8CEI3 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.83■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms