Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim35Q8C006 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim35Q8C006 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim35Q8C006 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
Trim35Q8C006 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.24■□□□□ 0.67
Trim35Q8C006 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim35Q8C006 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC19.24■□□□□ 0.67
Trim35Q8C006 Golph3-205ENSMUST00000228671 2842 ntBASIC19.24■□□□□ 0.67
Trim35Q8C006 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trim35Q8C006 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.23■□□□□ 0.67
Trim35Q8C006 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim35Q8C006 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim35Q8C006 Smad6-203ENSMUST00000179458 273 ntBASIC19.23■□□□□ 0.67
Trim35Q8C006 AC154849.3-201ENSMUST00000223733 1660 ntBASIC19.23■□□□□ 0.67
Trim35Q8C006 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim35Q8C006 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim35Q8C006 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Trim35Q8C006 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim35Q8C006 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 1700120G11Rik-201ENSMUST00000150273 491 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 Gm26833-201ENSMUST00000180899 440 ntBASIC19.22■□□□□ 0.67
Trim35Q8C006 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.22■□□□□ 0.67
Trim35Q8C006 Gm42565-201ENSMUST00000197839 572 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim35Q8C006 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trim35Q8C006 5930422O12Rik-201ENSMUST00000059351 840 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trim35Q8C006 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.22■□□□□ 0.67
Trim35Q8C006 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim35Q8C006 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim35Q8C006 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Trim35Q8C006 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim35Q8C006 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.21■□□□□ 0.67
Trim35Q8C006 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Trim35Q8C006 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC19.21■□□□□ 0.67
Trim35Q8C006 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Gm16833-202ENSMUST00000189204 672 ntTSL 2 BASIC19.21■□□□□ 0.67
Trim35Q8C006 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim35Q8C006 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Trim35Q8C006 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC19.2■□□□□ 0.66
Trim35Q8C006 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC19.2■□□□□ 0.66
Trim35Q8C006 Rpp30-201ENSMUST00000025714 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Il2-201ENSMUST00000029275 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim35Q8C006 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim35Q8C006 Alg13-207ENSMUST00000149330 479 ntTSL 2 BASIC19.19■□□□□ 0.66
Trim35Q8C006 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim35Q8C006 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Gm5797-201ENSMUST00000100886 997 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Gm3149-201ENSMUST00000112779 997 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim35Q8C006 Gm8362-202ENSMUST00000170673 997 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim35Q8C006 Gm18284-201ENSMUST00000172604 624 ntBASIC19.18■□□□□ 0.66
Trim35Q8C006 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim35Q8C006 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim35Q8C006 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Gm45657-201ENSMUST00000211318 1349 ntBASIC19.18■□□□□ 0.66
Trim35Q8C006 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim35Q8C006 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim35Q8C006 Cd59a-201ENSMUST00000040423 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim35Q8C006 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms