Protein–RNA interactions for Protein: Q8BI21

Rnf38, E3 ubiquitin-protein ligase RNF38, mousemouse

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf38Q8BI21 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf38Q8BI21 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Rnf38Q8BI21 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
Rnf38Q8BI21 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
Rnf38Q8BI21 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rnf38Q8BI21 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf38Q8BI21 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.19■□□□□ 0.5
Rnf38Q8BI21 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf38Q8BI21 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf38Q8BI21 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf38Q8BI21 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf38Q8BI21 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Rnf38Q8BI21 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Gm43137-201ENSMUST00000198052 594 ntBASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Spcs1-204ENSMUST00000226782 949 ntBASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rnf38Q8BI21 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Rnf38Q8BI21 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Gm12821-201ENSMUST00000120022 600 ntBASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.16■□□□□ 0.5
Rnf38Q8BI21 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Rnf38Q8BI21 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rnf38Q8BI21 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Rnf38Q8BI21 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Rnf38Q8BI21 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rnf38Q8BI21 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rnf38Q8BI21 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Rnf38Q8BI21 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Rnf38Q8BI21 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms