Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ShhQ62226 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ShhQ62226 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ShhQ62226 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ShhQ62226 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.54■□□□□ 0.4
ShhQ62226 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.54■□□□□ 0.4
ShhQ62226 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ShhQ62226 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
ShhQ62226 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
ShhQ62226 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ShhQ62226 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ShhQ62226 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ShhQ62226 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.53■□□□□ 0.4
ShhQ62226 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
ShhQ62226 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.53■□□□□ 0.4
ShhQ62226 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ShhQ62226 Gm12527-201ENSMUST00000117967 564 ntBASIC17.53■□□□□ 0.4
ShhQ62226 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.53■□□□□ 0.4
ShhQ62226 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ShhQ62226 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.53■□□□□ 0.4
ShhQ62226 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ShhQ62226 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ShhQ62226 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.52■□□□□ 0.4
ShhQ62226 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
ShhQ62226 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
ShhQ62226 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.52■□□□□ 0.4
ShhQ62226 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Gm13168-201ENSMUST00000121771 632 ntBASIC17.52■□□□□ 0.4
ShhQ62226 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.52■□□□□ 0.4
ShhQ62226 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ShhQ62226 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ShhQ62226 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ShhQ62226 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
ShhQ62226 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.39
ShhQ62226 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ShhQ62226 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ShhQ62226 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
ShhQ62226 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
ShhQ62226 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.51■□□□□ 0.39
ShhQ62226 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Gm27801-201ENSMUST00000184174 223 ntBASIC17.51■□□□□ 0.39
ShhQ62226 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.51■□□□□ 0.39
ShhQ62226 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ShhQ62226 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.5■□□□□ 0.39
ShhQ62226 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.5■□□□□ 0.39
ShhQ62226 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Gm10812-201ENSMUST00000099864 546 ntBASIC17.5■□□□□ 0.39
ShhQ62226 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
ShhQ62226 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ShhQ62226 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
ShhQ62226 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.49■□□□□ 0.39
ShhQ62226 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
ShhQ62226 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ShhQ62226 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.49■□□□□ 0.39
ShhQ62226 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
ShhQ62226 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ShhQ62226 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms