Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Mir1199-201ENSMUST00000117015 119 ntBASIC17.26■□□□□ 0.35
Usf1Q61069 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usf1Q61069 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Usf1Q61069 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Usf1Q61069 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
Usf1Q61069 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.25■□□□□ 0.35
Usf1Q61069 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.25■□□□□ 0.35
Usf1Q61069 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Usf1Q61069 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.25■□□□□ 0.35
Usf1Q61069 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17.25■□□□□ 0.35
Usf1Q61069 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Usf1Q61069 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usf1Q61069 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.24■□□□□ 0.35
Usf1Q61069 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Usf1Q61069 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Dmtn-209ENSMUST00000228295 2572 ntBASIC17.24■□□□□ 0.35
Usf1Q61069 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.24■□□□□ 0.35
Usf1Q61069 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Usf1Q61069 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.24■□□□□ 0.35
Usf1Q61069 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.24■□□□□ 0.35
Usf1Q61069 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usf1Q61069 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
Usf1Q61069 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC17.23■□□□□ 0.35
Usf1Q61069 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Usf1Q61069 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Usf1Q61069 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Gm32051-202ENSMUST00000197905 2385 ntBASIC17.23■□□□□ 0.35
Usf1Q61069 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usf1Q61069 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.22■□□□□ 0.35
Usf1Q61069 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC17.22■□□□□ 0.35
Usf1Q61069 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.22■□□□□ 0.35
Usf1Q61069 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.22■□□□□ 0.35
Usf1Q61069 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.22■□□□□ 0.35
Usf1Q61069 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usf1Q61069 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC17.21■□□□□ 0.35
Usf1Q61069 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17.21■□□□□ 0.35
Usf1Q61069 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usf1Q61069 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.21■□□□□ 0.35
Usf1Q61069 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Usf1Q61069 Gm15847-201ENSMUST00000121417 1065 ntBASIC17.21■□□□□ 0.35
Usf1Q61069 Gm13158-201ENSMUST00000122007 736 ntBASIC17.21■□□□□ 0.35
Usf1Q61069 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.21■□□□□ 0.35
Usf1Q61069 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Usf1Q61069 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.21■□□□□ 0.35
Usf1Q61069 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usf1Q61069 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Usf1Q61069 Gm9987-201ENSMUST00000069768 567 ntBASIC17.21■□□□□ 0.35
Usf1Q61069 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usf1Q61069 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Usf1Q61069 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Usf1Q61069 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Usf1Q61069 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Usf1Q61069 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Usf1Q61069 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.2■□□□□ 0.34
Usf1Q61069 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.2■□□□□ 0.34
Usf1Q61069 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.2■□□□□ 0.34
Usf1Q61069 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Usf1Q61069 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms