Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Limch1Q3UH68 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC22.2■■□□□ 1.14
Limch1Q3UH68 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
Limch1Q3UH68 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
Limch1Q3UH68 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Limch1Q3UH68 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Limch1Q3UH68 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Limch1Q3UH68 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Gm5784-201ENSMUST00000179344 2478 ntBASIC22.19■■□□□ 1.14
Limch1Q3UH68 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC22.19■■□□□ 1.14
Limch1Q3UH68 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Limch1Q3UH68 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC22.18■■□□□ 1.14
Limch1Q3UH68 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Limch1Q3UH68 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Gm27011-201ENSMUST00000182352 972 ntBASIC22.17■■□□□ 1.14
Limch1Q3UH68 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Limch1Q3UH68 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Limch1Q3UH68 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Limch1Q3UH68 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Limch1Q3UH68 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Gm9988-201ENSMUST00000069786 435 ntBASIC22.15■■□□□ 1.14
Limch1Q3UH68 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Limch1Q3UH68 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Limch1Q3UH68 BC021767-201ENSMUST00000126387 1716 ntBASIC22.14■■□□□ 1.14
Limch1Q3UH68 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Limch1Q3UH68 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Limch1Q3UH68 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Limch1Q3UH68 Gm43231-201ENSMUST00000202960 2258 ntBASIC22.13■■□□□ 1.13
Limch1Q3UH68 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms