Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm13148-201ENSMUST00000118892 745 ntBASIC18.02■□□□□ 0.48
Sox3P53784 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.02■□□□□ 0.48
Sox3P53784 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.02■□□□□ 0.48
Sox3P53784 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Sox3P53784 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Sox3P53784 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.02■□□□□ 0.48
Sox3P53784 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sox3P53784 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Sox3P53784 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.01■□□□□ 0.47
Sox3P53784 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.01■□□□□ 0.47
Sox3P53784 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.01■□□□□ 0.47
Sox3P53784 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Sox3P53784 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Sox3P53784 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18■□□□□ 0.47
Sox3P53784 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sox3P53784 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18■□□□□ 0.47
Sox3P53784 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18■□□□□ 0.47
Sox3P53784 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Sox3P53784 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sox3P53784 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
Sox3P53784 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18■□□□□ 0.47
Sox3P53784 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18■□□□□ 0.47
Sox3P53784 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sox3P53784 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Sox3P53784 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sox3P53784 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Sox3P53784 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Sox3P53784 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Sox3P53784 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Golph3-205ENSMUST00000228671 2842 ntBASIC17.99■□□□□ 0.47
Sox3P53784 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sox3P53784 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sox3P53784 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Sox3P53784 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sox3P53784 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.98■□□□□ 0.47
Sox3P53784 Gm13836-201ENSMUST00000121159 501 ntBASIC17.98■□□□□ 0.47
Sox3P53784 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.98■□□□□ 0.47
Sox3P53784 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.98■□□□□ 0.47
Sox3P53784 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.98■□□□□ 0.47
Sox3P53784 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sox3P53784 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sox3P53784 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Gm5408-201ENSMUST00000197998 747 ntBASIC17.97■□□□□ 0.47
Sox3P53784 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sox3P53784 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.96■□□□□ 0.47
Sox3P53784 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Sox3P53784 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.96■□□□□ 0.47
Sox3P53784 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.96■□□□□ 0.47
Sox3P53784 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sox3P53784 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox3P53784 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sox3P53784 Gm7290-201ENSMUST00000104990 617 ntBASIC17.95■□□□□ 0.46
Sox3P53784 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.95■□□□□ 0.46
Sox3P53784 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sox3P53784 Gm12918-201ENSMUST00000120234 636 ntBASIC17.95■□□□□ 0.46
Sox3P53784 Gm15710-201ENSMUST00000121821 636 ntBASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms