Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.74■□□□□ 0.43
Lire1P11260 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.74■□□□□ 0.43
Lire1P11260 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Lire1P11260 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lire1P11260 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.74■□□□□ 0.43
Lire1P11260 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Lire1P11260 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Lire1P11260 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Gm27405-201ENSMUST00000184201 112 ntBASIC17.73■□□□□ 0.43
Lire1P11260 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Lire1P11260 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Lire1P11260 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lire1P11260 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.72■□□□□ 0.43
Lire1P11260 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Lire1P11260 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Lire1P11260 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Lire1P11260 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Gm29257-201ENSMUST00000186115 639 ntBASIC17.72■□□□□ 0.43
Lire1P11260 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.72■□□□□ 0.43
Lire1P11260 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.72■□□□□ 0.43
Lire1P11260 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC17.72■□□□□ 0.43
Lire1P11260 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lire1P11260 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Lire1P11260 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Lire1P11260 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Lire1P11260 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.71■□□□□ 0.43
Lire1P11260 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.71■□□□□ 0.43
Lire1P11260 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.71■□□□□ 0.43
Lire1P11260 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Lire1P11260 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 Haglr-201ENSMUST00000100000 2085 ntBASIC17.71■□□□□ 0.43
Lire1P11260 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lire1P11260 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.71■□□□□ 0.43
Lire1P11260 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Lire1P11260 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Lire1P11260 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
Lire1P11260 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Lire1P11260 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Lire1P11260 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Lire1P11260 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.7■□□□□ 0.42
Lire1P11260 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Lire1P11260 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Lire1P11260 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
Lire1P11260 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Lire1P11260 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lire1P11260 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Lire1P11260 Gm10849-201ENSMUST00000100397 618 ntBASIC17.69■□□□□ 0.42
Lire1P11260 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC17.69■□□□□ 0.42
Lire1P11260 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms