Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdha4O88689 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.13■□□□□ 0.97
Pcdha4O88689 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.13■□□□□ 0.97
Pcdha4O88689 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Pcdha4O88689 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Pcdha4O88689 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.13■□□□□ 0.97
Pcdha4O88689 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdha4O88689 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Gm37179-201ENSMUST00000194862 823 ntBASIC21.12■□□□□ 0.97
Pcdha4O88689 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.12■□□□□ 0.97
Pcdha4O88689 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC21.12■□□□□ 0.97
Pcdha4O88689 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdha4O88689 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.11■□□□□ 0.97
Pcdha4O88689 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.11■□□□□ 0.97
Pcdha4O88689 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.11■□□□□ 0.97
Pcdha4O88689 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Pcdha4O88689 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.11■□□□□ 0.97
Pcdha4O88689 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Pcdha4O88689 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdha4O88689 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdha4O88689 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Pcdha4O88689 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdha4O88689 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdha4O88689 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Pcdha4O88689 Nespas-201ENSMUST00000143738 1083 ntBASIC21.1■□□□□ 0.97
Pcdha4O88689 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdha4O88689 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdha4O88689 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdha4O88689 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.1■□□□□ 0.97
Pcdha4O88689 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdha4O88689 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Pcdha4O88689 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Pcdha4O88689 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Pcdha4O88689 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.09■□□□□ 0.97
Pcdha4O88689 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC21.09■□□□□ 0.97
Pcdha4O88689 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Pcdha4O88689 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdha4O88689 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.08■□□□□ 0.97
Pcdha4O88689 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdha4O88689 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdha4O88689 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdha4O88689 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.08■□□□□ 0.97
Pcdha4O88689 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdha4O88689 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdha4O88689 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdha4O88689 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Pcdha4O88689 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Pcdha4O88689 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 AC131586.2-201ENSMUST00000228370 1512 ntBASIC21.07■□□□□ 0.96
Pcdha4O88689 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdha4O88689 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms