Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Gm45058-201ENSMUST00000205810 766 ntBASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Gm8784-201ENSMUST00000222096 1435 ntBASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Gm18669-201ENSMUST00000216049 778 ntBASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Gm27525-201ENSMUST00000184465 107 ntBASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Gm42545-201ENSMUST00000202755 922 ntBASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col6a3E9PWQ3 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col6a3E9PWQ3 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a3E9PWQ3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC19.17■□□□□ 0.66
Col6a3E9PWQ3 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Col6a3E9PWQ3 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a3E9PWQ3 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col6a3E9PWQ3 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.16■□□□□ 0.66
Col6a3E9PWQ3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col6a3E9PWQ3 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col6a3E9PWQ3 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Timm23-208ENSMUST00000226683 750 ntBASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.14■□□□□ 0.65
Col6a3E9PWQ3 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col6a3E9PWQ3 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Gm43438-201ENSMUST00000198133 379 ntBASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Col6a3E9PWQ3 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Col6a3E9PWQ3 Gm6623-201ENSMUST00000173570 544 ntBASIC19.1■□□□□ 0.65
Col6a3E9PWQ3 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col6a3E9PWQ3 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col6a3E9PWQ3 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms