Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Chd3B1AR17 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Chd3B1AR17 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Chd3B1AR17 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chd3B1AR17 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Chd3B1AR17 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Chd3B1AR17 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.57■□□□□ 0.56
Chd3B1AR17 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.57■□□□□ 0.56
Chd3B1AR17 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Chd3B1AR17 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Chd3B1AR17 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.57■□□□□ 0.56
Chd3B1AR17 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
Chd3B1AR17 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
Chd3B1AR17 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.57■□□□□ 0.56
Chd3B1AR17 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Chd3B1AR17 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chd3B1AR17 Gm12527-201ENSMUST00000117967 564 ntBASIC18.56■□□□□ 0.56
Chd3B1AR17 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Chd3B1AR17 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Chd3B1AR17 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chd3B1AR17 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Chd3B1AR17 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
Chd3B1AR17 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.56■□□□□ 0.56
Chd3B1AR17 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Chd3B1AR17 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chd3B1AR17 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chd3B1AR17 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.56■□□□□ 0.56
Chd3B1AR17 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Chd3B1AR17 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Chd3B1AR17 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Chd3B1AR17 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Chd3B1AR17 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Chd3B1AR17 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Chd3B1AR17 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Chd3B1AR17 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Chd3B1AR17 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Chd3B1AR17 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.54■□□□□ 0.56
Chd3B1AR17 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.54■□□□□ 0.56
Chd3B1AR17 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Chd3B1AR17 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Chd3B1AR17 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chd3B1AR17 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Chd3B1AR17 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Chd3B1AR17 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chd3B1AR17 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chd3B1AR17 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chd3B1AR17 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chd3B1AR17 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Chd3B1AR17 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Chd3B1AR17 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Chd3B1AR17 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Chd3B1AR17 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC18.53■□□□□ 0.56
Chd3B1AR17 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
Chd3B1AR17 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Chd3B1AR17 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Chd3B1AR17 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chd3B1AR17 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chd3B1AR17 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Chd3B1AR17 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Chd3B1AR17 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chd3B1AR17 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.51■□□□□ 0.55
Chd3B1AR17 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Chd3B1AR17 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC18.51■□□□□ 0.55
Chd3B1AR17 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Chd3B1AR17 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.51■□□□□ 0.55
Chd3B1AR17 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Chd3B1AR17 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Chd3B1AR17 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.5■□□□□ 0.55
Chd3B1AR17 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Chd3B1AR17 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms