Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Scn4aQ9ER60 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 AC159205.6-201ENSMUST00000224935 887 ntBASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Scn4aQ9ER60 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Scn4aQ9ER60 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
Scn4aQ9ER60 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Scn4aQ9ER60 Gm43183-201ENSMUST00000200632 547 ntBASIC26.54■■□□□ 1.84
Scn4aQ9ER60 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Scn4aQ9ER60 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Scn4aQ9ER60 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Scn4aQ9ER60 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Scn4aQ9ER60 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC26.51■■□□□ 1.83
Scn4aQ9ER60 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
Scn4aQ9ER60 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn4aQ9ER60 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn4aQ9ER60 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC26.51■■□□□ 1.83
Scn4aQ9ER60 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn4aQ9ER60 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Scn4aQ9ER60 H3f3aos-201ENSMUST00000097448 2905 ntBASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Gm5867-201ENSMUST00000063197 592 ntBASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Gm37415-201ENSMUST00000192265 2054 ntBASIC26.5■■□□□ 1.83
Scn4aQ9ER60 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn4aQ9ER60 Gm12382-201ENSMUST00000122005 922 ntBASIC26.48■■□□□ 1.83
Scn4aQ9ER60 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC26.48■■□□□ 1.83
Scn4aQ9ER60 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Scn4aQ9ER60 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Scn4aQ9ER60 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
Scn4aQ9ER60 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
Scn4aQ9ER60 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Scn4aQ9ER60 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Scn4aQ9ER60 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
Scn4aQ9ER60 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Umpk-ps-201ENSMUST00000211897 827 ntBASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Scn4aQ9ER60 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
Scn4aQ9ER60 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
Scn4aQ9ER60 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
Scn4aQ9ER60 Gm28033-201ENSMUST00000184224 96 ntBASIC26.45■■□□□ 1.82
Scn4aQ9ER60 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC26.45■■□□□ 1.82
Scn4aQ9ER60 Gm18025-201ENSMUST00000221733 862 ntBASIC26.45■■□□□ 1.82
Scn4aQ9ER60 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Scn4aQ9ER60 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
Scn4aQ9ER60 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Scn4aQ9ER60 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Scn4aQ9ER60 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Scn4aQ9ER60 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms