Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Ddx56Q9D0R4 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddx56Q9D0R4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddx56Q9D0R4 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddx56Q9D0R4 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddx56Q9D0R4 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx56Q9D0R4 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx56Q9D0R4 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx56Q9D0R4 Gm38205-201ENSMUST00000192243 258 ntBASIC19.88■□□□□ 0.77
Ddx56Q9D0R4 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx56Q9D0R4 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC19.88■□□□□ 0.77
Ddx56Q9D0R4 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddx56Q9D0R4 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 BC021767-201ENSMUST00000126387 1716 ntBASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.87■□□□□ 0.77
Ddx56Q9D0R4 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Ddx56Q9D0R4 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx56Q9D0R4 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms