Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh4Q99MT2 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.41■□□□□ 0.54
Msh4Q99MT2 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh4Q99MT2 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh4Q99MT2 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Msh4Q99MT2 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Msh4Q99MT2 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.39■□□□□ 0.53
Msh4Q99MT2 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
Msh4Q99MT2 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.39■□□□□ 0.53
Msh4Q99MT2 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.39■□□□□ 0.53
Msh4Q99MT2 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.39■□□□□ 0.53
Msh4Q99MT2 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh4Q99MT2 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Msh4Q99MT2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Msh4Q99MT2 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Gm27801-201ENSMUST00000184174 223 ntBASIC18.36■□□□□ 0.53
Msh4Q99MT2 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Msh4Q99MT2 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms