Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp11Q99K46 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
Usp11Q99K46 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Usp11Q99K46 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.91■□□□□ 0.78
Usp11Q99K46 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp11Q99K46 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp11Q99K46 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp11Q99K46 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp11Q99K46 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp11Q99K46 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.9■□□□□ 0.78
Usp11Q99K46 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp11Q99K46 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
Usp11Q99K46 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Usp11Q99K46 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usp11Q99K46 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp11Q99K46 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp11Q99K46 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp11Q99K46 Gm26833-201ENSMUST00000180899 440 ntBASIC19.89■□□□□ 0.77
Usp11Q99K46 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp11Q99K46 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usp11Q99K46 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Usp11Q99K46 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp11Q99K46 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.89■□□□□ 0.77
Usp11Q99K46 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp11Q99K46 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
Usp11Q99K46 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp11Q99K46 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp11Q99K46 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp11Q99K46 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.88■□□□□ 0.77
Usp11Q99K46 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Usp11Q99K46 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp11Q99K46 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.87■□□□□ 0.77
Usp11Q99K46 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp11Q99K46 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.86■□□□□ 0.77
Usp11Q99K46 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp11Q99K46 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.86■□□□□ 0.77
Usp11Q99K46 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Usp11Q99K46 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.86■□□□□ 0.77
Usp11Q99K46 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.86■□□□□ 0.77
Usp11Q99K46 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp11Q99K46 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp11Q99K46 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Usp11Q99K46 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
Usp11Q99K46 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC19.85■□□□□ 0.77
Usp11Q99K46 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Usp11Q99K46 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp11Q99K46 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp11Q99K46 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Usp11Q99K46 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Usp11Q99K46 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Usp11Q99K46 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp11Q99K46 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms