Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc28aQ8CEI3 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc28aQ8CEI3 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc28aQ8CEI3 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc28aQ8CEI3 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Golgb1-201ENSMUST00000023534 498 ntBASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc28aQ8CEI3 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28aQ8CEI3 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28aQ8CEI3 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28aQ8CEI3 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28aQ8CEI3 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
Ccdc28aQ8CEI3 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28aQ8CEI3 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ccdc28aQ8CEI3 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ccdc28aQ8CEI3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Gm45102-201ENSMUST00000207427 857 ntBASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.91■□□□□ 0.78
Ccdc28aQ8CEI3 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms