Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Vps53Q8CCB4 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Vps53Q8CCB4 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Vps53Q8CCB4 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Vps53Q8CCB4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Vps53Q8CCB4 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Vps53Q8CCB4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Vps53Q8CCB4 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Vps53Q8CCB4 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Vps53Q8CCB4 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Vps53Q8CCB4 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Vps53Q8CCB4 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC22.02■■□□□ 1.12
Vps53Q8CCB4 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC22.02■■□□□ 1.11
Vps53Q8CCB4 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.11
Vps53Q8CCB4 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Vps53Q8CCB4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Vps53Q8CCB4 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Vps53Q8CCB4 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC22■■□□□ 1.11
Vps53Q8CCB4 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Vps53Q8CCB4 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Vps53Q8CCB4 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Vps53Q8CCB4 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC22■■□□□ 1.11
Vps53Q8CCB4 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC22■■□□□ 1.11
Vps53Q8CCB4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Vps53Q8CCB4 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Vps53Q8CCB4 Gm9988-201ENSMUST00000069786 435 ntBASIC22■■□□□ 1.11
Vps53Q8CCB4 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC22■■□□□ 1.11
Vps53Q8CCB4 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Vps53Q8CCB4 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Vps53Q8CCB4 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Gm12933-201ENSMUST00000120203 872 ntBASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Vps53Q8CCB4 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
Vps53Q8CCB4 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Vps53Q8CCB4 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC21.96■■□□□ 1.11
Vps53Q8CCB4 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Vps53Q8CCB4 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Vps53Q8CCB4 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Vps53Q8CCB4 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.95■■□□□ 1.1
Vps53Q8CCB4 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.95■■□□□ 1.1
Vps53Q8CCB4 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.95■■□□□ 1.1
Vps53Q8CCB4 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Vps53Q8CCB4 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Vps53Q8CCB4 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Vps53Q8CCB4 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.94■■□□□ 1.1
Vps53Q8CCB4 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms