Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col6a6Q8C6K9 Gm15378-201ENSMUST00000121894 207 ntBASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Mir5122-201ENSMUST00000175004 89 ntBASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col6a6Q8C6K9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Col6a6Q8C6K9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Gm44549-201ENSMUST00000208351 577 ntBASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.12■□□□□ 0.33
Col6a6Q8C6K9 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col6a6Q8C6K9 Gm11249-201ENSMUST00000117071 859 ntBASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Gm6433-201ENSMUST00000118634 875 ntBASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Gm13158-201ENSMUST00000122007 736 ntBASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col6a6Q8C6K9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms