Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sh3rf3Q8C120 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Sh3rf3Q8C120 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf3Q8C120 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Sh3rf3Q8C120 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf3Q8C120 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sh3rf3Q8C120 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.73■□□□□ 0.75
Sh3rf3Q8C120 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sh3rf3Q8C120 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Sh3rf3Q8C120 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sh3rf3Q8C120 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Gm7860-201ENSMUST00000121190 879 ntBASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sh3rf3Q8C120 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Gm14281-201ENSMUST00000121700 1294 ntBASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sh3rf3Q8C120 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.67■□□□□ 0.74
Sh3rf3Q8C120 Gm38205-201ENSMUST00000192243 258 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms