Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim47Q8C0E3 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Trim47Q8C0E3 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim47Q8C0E3 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Trim47Q8C0E3 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim47Q8C0E3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim47Q8C0E3 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Trim47Q8C0E3 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim47Q8C0E3 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim47Q8C0E3 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim47Q8C0E3 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC21.06■□□□□ 0.96
Trim47Q8C0E3 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.05■□□□□ 0.96
Trim47Q8C0E3 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim47Q8C0E3 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Gm42555-201ENSMUST00000199304 1039 ntBASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Trim47Q8C0E3 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim47Q8C0E3 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trim47Q8C0E3 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim47Q8C0E3 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim47Q8C0E3 Gm5540-201ENSMUST00000131852 1848 ntBASIC21■□□□□ 0.95
Trim47Q8C0E3 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim47Q8C0E3 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim47Q8C0E3 Gm6365-201ENSMUST00000054711 744 ntBASIC21■□□□□ 0.95
Trim47Q8C0E3 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim47Q8C0E3 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim47Q8C0E3 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trim47Q8C0E3 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim47Q8C0E3 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.98■□□□□ 0.95
Trim47Q8C0E3 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trim47Q8C0E3 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms