Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC26.2■■□□□ 1.79
Usp40Q8BWR4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Usp40Q8BWR4 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Usp40Q8BWR4 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Usp40Q8BWR4 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Usp40Q8BWR4 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Usp40Q8BWR4 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Usp40Q8BWR4 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Usp40Q8BWR4 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Usp40Q8BWR4 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC26.19■■□□□ 1.78
Usp40Q8BWR4 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Usp40Q8BWR4 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Usp40Q8BWR4 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC26.19■■□□□ 1.78
Usp40Q8BWR4 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Usp40Q8BWR4 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Gm13168-201ENSMUST00000121771 632 ntBASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Usp40Q8BWR4 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Usp40Q8BWR4 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Usp40Q8BWR4 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Usp40Q8BWR4 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
Usp40Q8BWR4 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
Usp40Q8BWR4 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Usp40Q8BWR4 Gm34220-201ENSMUST00000223001 2709 ntBASIC26.17■■□□□ 1.78
Usp40Q8BWR4 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Usp40Q8BWR4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Usp40Q8BWR4 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC26.16■■□□□ 1.78
Usp40Q8BWR4 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Usp40Q8BWR4 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC26.16■■□□□ 1.78
Usp40Q8BWR4 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC26.16■■□□□ 1.78
Usp40Q8BWR4 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Trmt13-210ENSMUST00000198454 880 ntBASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC26.15■■□□□ 1.78
Usp40Q8BWR4 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
Usp40Q8BWR4 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC26.14■■□□□ 1.78
Usp40Q8BWR4 Gm44878-201ENSMUST00000205812 1295 ntBASIC26.14■■□□□ 1.78
Usp40Q8BWR4 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Usp40Q8BWR4 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC26.13■■□□□ 1.77
Usp40Q8BWR4 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
Usp40Q8BWR4 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Gm5540-201ENSMUST00000131852 1848 ntBASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Gm27275-201ENSMUST00000184318 272 ntBASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Usp40Q8BWR4 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Gm19094-201ENSMUST00000209791 1246 ntBASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Gm10167-201ENSMUST00000150411 1479 ntBASIC26.1■■□□□ 1.77
Usp40Q8BWR4 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC26.1■■□□□ 1.77
Usp40Q8BWR4 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Gm43672-201ENSMUST00000199072 1731 ntBASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms